STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90046.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
EEC90044.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dps:DP0883 1.1e-60 related to two-component system sensory/regulatory protein (hybrid family) K07679; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
EEC90045.1
Hypothetical protein; KEGG: ava:Ava_3990 0.0027 thioesterase K01071; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEC90047.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEC90048.1
Hypothetical protein.
       0.553
EEC90043.1
Hypothetical protein; KEGG: pho:PH1983 3.3e-07 V-type H+-transporting ATPase subunit E K02121; Psort location: Cytoplasmic, score: 8.87.
       0.413
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.