STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90048.1Hypothetical protein. (516 aa)    
Predicted Functional Partners:
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.870
EEC88875.1
Hypothetical protein; KEGG: lil:LA0966 0.0041 recB; exodeoxyribonuclease V, beta chain K03582; Psort location: Cytoplasmic, score: 8.87.
  
     0.584
EEC90047.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.558
EEC90044.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dps:DP0883 1.1e-60 related to two-component system sensory/regulatory protein (hybrid family) K07679; Psort location: CytoplasmicMembrane, score: 9.82.
       0.553
EEC90045.1
Hypothetical protein; KEGG: ava:Ava_3990 0.0027 thioesterase K01071; Psort location: Cytoplasmic, score: 8.87.
       0.553
EEC90046.1
Hypothetical protein.
       0.553
EEC90307.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.549
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.518
EEC89683.1
Hypothetical protein; KEGG: pfa:PFI0165c 0.0033 DEAD/DEAH box helicase, putative K01529; Psort location: Cytoplasmic, score: 8.87.
  
     0.412
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.