STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnA-2Glutamate--ammonia ligase, catalytic domain protein; KEGG: tte:TTE0821 3.3e-227 glnA; Glutamine synthase K01915; Psort location: Cytoplasmic, score: 9.98; Belongs to the glutamine synthetase family. (696 aa)    
Predicted Functional Partners:
EEC90055.1
Class II glutamine amidotransferase; KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.975
EEC90056.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: syn:sll1027 5.4e-133 gltD; NADH-dependent glutamate synthase small subunit K00269; Psort location: Cytoplasmic, score: 9.98.
    
 0.912
EEC90052.1
Glutamine synthetase, beta-grasp domain protein; KEGG: chy:CHY_0704 2.1e-83 glnA1; glutamine synthetase K01915; Psort location: Cytoplasmic, score: 9.98.
    
 0.910
EEC91333.1
Glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; KEGG: lsl:LSL_1297 8.3e-160 gdhA; NADP-specific glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.98; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
    
 0.818
purF-2
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.
    
 0.812
carA
KEGG: fnu:FN0421 1.3e-122 carbamoyl-phosphate synthase small chain K01956; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarA family.
  
 
  0.806
carA-2
KEGG: bsu:BG10715 2.4e-98 pyrAA; carbamoyl-phosphate synthase small chain K01956; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarA family.
  
 
  0.806
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.803
carB
KEGG: bce:BC3886 0. carbamoyl-phosphate synthase large chain K01955; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarB family.
  
 
 0.802
carB-2
KEGG: bce:BC3886 0. carbamoyl-phosphate synthase large chain K01955; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarB family.
  
 
 0.802
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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