STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90027.1Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VFA0381 1.0e-09 sensory transduction protein kinase; Psort location: CytoplasmicMembrane, score: 9.99. (359 aa)    
Predicted Functional Partners:
EEC91078.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 1.4e-47 sensory transduction protein kinase; Psort location: Cytoplasmic, score: 9.98.
 
 
 0.979
EEC91075.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: eci:UTI89_C1612 6.9e-20 ydaM; hypothetical protein YdaM; Psort location: Cytoplasmic, score: 8.87.
 
0.940
EEC91183.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: mca:MCA1246 1.7e-08 methyltransferase CheR, putative K03412:K00575; Psort location: Cytoplasmic, score: 8.87.
 
 
0.894
EEC91320.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 4.0e-45 sensory transduction protein kinase; Psort location: CytoplasmicMembrane, score: 9.75.
 
 
 0.838
EEC90714.1
Cyclic diguanylate phosphodiesterase (EAL) domain protein; KEGG: vfi:VF0087 8.8e-15 sensory transduction protein kinase; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.835
EEC89315.1
HD domain protein; KEGG: ava:Ava_1777 1.4e-22 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.827
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.798
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.796
EEC90032.1
PASTA domain protein; KEGG: lsa:LSA0692 3.8e-13 putative serine/threonine protein kinase K08884.
  
  
 0.781
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
     
 0.774
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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