STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90012.1KEGG: ban:BA5658 3.3e-14 hydrolase, haloacid dehalogenase-like family K01560; Psort location: Cytoplasmic, score: 8.87. (248 aa)    
Predicted Functional Partners:
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.907
EEC91230.1
KEGG: lwe:lwe0114 3.8e-203 inosine-5-monophosphate dehydrogenase, putative K00088; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.881
EEC90913.1
Competence/damage-inducible domain protein CinA; Belongs to the CinA family.
    
  0.868
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.867
EEC89086.1
HAD hydrolase, family IIB; KEGG: pfa:PF10_0169 0.00031 phosphomannomutase, putative K01840; Psort location: Cytoplasmic, score: 8.87.
    
 0.823
EEC90013.1
Peptidase family T4; KEGG: pho:PH0078 2.2e-65 D-aminopeptidase K01266; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEC90945.1
MIP family channel protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.744
EEC91383.1
Trypsin; KEGG: chy:CHY_0057 1.2e-62 putative serine protease Do.
  
 
 0.639
EEC90057.1
Trypsin; KEGG: bld:BLi01390 6.1e-45 htrA; serine protease Do (heat-shock protein); RBL00645.
  
 
 0.639
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.87.
       0.604
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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