STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90021.1Hypothetical protein. (247 aa)    
Predicted Functional Partners:
EEC90180.1
Putative phosphoribosylamine--glycine ligase; KEGG: mst:Msp_1200 1.9e-07 carB; CarB K01955; Psort location: Cytoplasmic, score: 8.87.
 
     0.806
EEC90179.1
KEGG: pfu:PF1108 4.1e-32 putative alpha-dextrin endo-1,6-alpha-glucosidase K01200.
 
     0.792
EEC90020.1
Fic family protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
typA
KEGG: cch:Cag_1518 3.2e-158 typA; GTP-binding protein TypA K06207; Psort location: Cytoplasmic, score: 9.98.
       0.561
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.