STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89919.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (101 aa)    
Predicted Functional Partners:
EEC89922.1
ABC transporter, ATP-binding protein; KEGG: cch:Cag_0716 1.2e-64 ATPase K06148; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.909
EEC89921.1
Hypothetical protein; KEGG: bur:Bcep18194_B1962 7.1e-34 ABC efflux pump, fused ATPase and inner membrane subunits K06021:K06022; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.901
EEC89920.1
ABC transporter, ATP-binding protein; KEGG: ava:Ava_4147 2.0e-18 ABC transporter-like K06021; Psort location: CytoplasmicMembrane, score: 9.49.
 
     0.861
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
     
 0.571
rnhB
Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
   
    0.497
EEC89918.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.486
EEC89917.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.477
EEC89923.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.410
EEC90320.1
Transcriptional regulator, MarR family; Psort location: Cytoplasmic, score: 8.87.
    
  0.408
EEC89241.1
Transcriptional regulator, MarR family; Psort location: Cytoplasmic, score: 8.87.
    
  0.408
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.