STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89887.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (49 aa)    
Predicted Functional Partners:
EEC89888.1
Hypothetical protein; KEGG: bca:BCE_1314 0.00037 pepF; oligoendopeptidase F K08602.
       0.598
EEC89889.1
Hypothetical protein; KEGG: hpa:HPAG1_0914 0.00038 hypothetical protein K04071; Psort location: Cytoplasmic, score: 8.87.
       0.598
EEC89891.1
Hypothetical protein.
       0.598
EEC89890.1
MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.452
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.