STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89882.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (86 aa)    
Predicted Functional Partners:
EEC89822.1
KEGG: chy:CHY_0011 1.8e-61 cysteine desulfurase family protein K01763; Psort location: Cytoplasmic, score: 8.87.
   
   0.943
EEC89823.1
Selenium-dependent molybdenum hydroxylase system protein, YqeB family; Psort location: Cytoplasmic, score: 8.87.
   
   0.943
EEC90065.1
Phosphotransferase system, EIIB; KEGG: lpl:lp_3513 3.7e-77 pts30BCA; beta-glucosides PTS, EIIBCA K02755:K02756:K02757; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.924
EEC89042.1
Phosphotransferase system, EIIC; KEGG: bbu:BBB29 1.2e-135 malX; PTS system, maltose and glucose-specific IIBC component K02790:K02791; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.924
sufS
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.909
EEC89881.1
Hypothetical protein; Psort location: Cytoplasmic, score: 9.98; Belongs to the UPF0597 family.
       0.773
EEC89817.1
Transporter, small conductance mechanosensitive ion channel MscS family protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.730
EEC89818.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.729
EEC89815.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.718
EEC89816.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.718
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.