STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89817.1Transporter, small conductance mechanosensitive ion channel MscS family protein; Psort location: CytoplasmicMembrane, score: 9.99. (259 aa)    
Predicted Functional Partners:
EEC89815.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEC89816.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEC89818.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
EEC89882.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.730
EEC89881.1
Hypothetical protein; Psort location: Cytoplasmic, score: 9.98; Belongs to the UPF0597 family.
       0.718
EEC89819.1
KEGG: bcz:BCZK3297 0.00096 RNA polymerase ECF-type sigma factor K03088; Psort location: Cytoplasmic, score: 8.87.
       0.614
EEC89820.1
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: bcz:BCZK2266 1.8e-38 D-alanyl-D-alanine carboxypeptidase K01286; Psort location: Cytoplasmic, score: 9.36.
       0.613
modA
Molybdate ABC transporter, periplasmic molybdate-binding protein.
     
 0.450
EEC89830.1
ABC transporter, ATP-binding protein; KEGG: syn:sll0739 1.9e-50 modBC; ABC-type molybdate transport system permease/ATP-binding protein K02018; Psort location: CytoplasmicMembrane, score: 9.49.
       0.447
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.436
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.