STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89861.1KEGG: shn:Shewana3_3435 1.3e-17 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.65; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
EEC90838.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 9.2e-12 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family.
  
     0.754
EEC90938.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 1.4e-11 transcriptional regulator, LysR family K06022; Psort location: Cytoplasmic, score: 9.98; Belongs to the LysR transcriptional regulatory family.
  
     0.731
EEC89860.1
Putative permease; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.640
EEC89859.1
KEGG: fnu:FN2073 2.8e-49 adenine phosphoribosyltransferase K00759; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.624
EEC89863.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
  
    0.594
EEC89862.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
       0.586
EEC90067.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: eci:UTI89_C1612 2.5e-10 ydaM; hypothetical protein YdaM.
  
 
 0.526
EEC90055.1
Class II glutamine amidotransferase; KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.490
potA
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.452
EEC89830.1
ABC transporter, ATP-binding protein; KEGG: syn:sll0739 1.9e-50 modBC; ABC-type molybdate transport system permease/ATP-binding protein K02018; Psort location: CytoplasmicMembrane, score: 9.49.
  
 
 0.452
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.