STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89871.1ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 1.0e-24 comA; competence factor transporting ATP-binding/permease protein ComA; Psort location: CytoplasmicMembrane, score: 9.99. (551 aa)    
Predicted Functional Partners:
EEC90494.1
ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 9.8e-28 comA; competence factor transporting ATP-binding/permease protein ComA; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
0.894
EEC88980.1
ABC transporter, ATP-binding protein; KEGG: fnu:FN1797 3.9e-27 potA; spermidine/putrescine transport ATP-binding protein potA K02052; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.835
EEC88971.1
KEGG: fal:FRAAL3681 2.3e-29 putative ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.803
EEC90497.1
KEGG: lwe:lwe1990 4.1e-32 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.802
EEC89795.1
KEGG: lwe:lwe1990 1.5e-32 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.793
EEC90602.1
KEGG: fal:FRAAL1877 1.8e-31 putative ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.786
EEC90092.1
ATPase, AAA family; KEGG: sru:SRU_1819 9.5e-07 ftsH; cell division protein FtsH K03798; Psort location: Cytoplasmic, score: 8.87.
   
 0.778
EEC90606.1
KEGG: lwe:lwe2158 4.5e-26 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49.
  
     0.708
EEC89920.1
ABC transporter, ATP-binding protein; KEGG: ava:Ava_4147 2.0e-18 ABC transporter-like K06021; Psort location: CytoplasmicMembrane, score: 9.49.
  
     0.702
EEC89148.1
KEGG: spn:SP_0709 4.3e-21 amino acid ABC transporter, ATP-binding protein K02028; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.697
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.