STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89788.1Hypothetical protein; KEGG: cal:orf19.5599 0.00012 MDL2; ATP-binding transporter, 3- prime end K01509; Psort location: CytoplasmicMembrane, score: 9.97. (425 aa)    
Predicted Functional Partners:
EEC90494.1
ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 9.8e-28 comA; competence factor transporting ATP-binding/permease protein ComA; Psort location: CytoplasmicMembrane, score: 10.00.
   
 0.849
EEC89789.1
ABC transporter, ATP-binding protein; KEGG: hpa:HPAG1_0365 1.0e-22 multidrug resistance protein K01509; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.834
EEC90092.1
ATPase, AAA family; KEGG: sru:SRU_1819 9.5e-07 ftsH; cell division protein FtsH K03798; Psort location: Cytoplasmic, score: 8.87.
   
 0.778
EEC90122.1
Sel1 repeat protein; KEGG: eci:UTI89_C1133 4.2e-07 hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
  
  0.726
EEC89972.1
Low molecular weight phosphotyrosine protein phosphatase; KEGG: lac:LBA0722 1.3e-26 protein-tyrosine phosphatase K01104; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
 
 
 0.637
EEC90536.1
DJ-1 family protein; KEGG: tte:TTE0986 6.5e-18 thiJ; putative intracellular protease/amidase K05520; Psort location: Cytoplasmic, score: 8.87.
  
 0.559
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.557
EEC89843.1
PP-loop family protein; KEGG: nme:NMB1023 8.5e-32 hypothetical protein K04075; Psort location: Cytoplasmic, score: 8.87; Belongs to the TtcA family.
  
 
 0.549
EEC90180.1
Putative phosphoribosylamine--glycine ligase; KEGG: mst:Msp_1200 1.9e-07 carB; CarB K01955; Psort location: Cytoplasmic, score: 8.87.
   
 0.527
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.511
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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