STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89733.1KEGG: lsl:LSL_1950 3.4e-51 PTS system, mannose-specific IIC component K00890; Psort location: CytoplasmicMembrane, score: 10.00. (253 aa)    
Predicted Functional Partners:
EEC89732.1
KEGG: lsl:LSL_1949 3.2e-71 PTS system, mannose-specific IID component K00890; Psort location: CytoplasmicMembrane, score: 10.00.
 0.989
EEC89734.1
KEGG: lsl:LSL_1951 2.2e-31 PTS system, mannose-specific IIAB component K00890; Psort location: Cytoplasmic, score: 9.65.
 
 0.973
EEC89040.1
KEGG: efa:EF0020 3.7e-125 PTS system, mannose-specific IIAB components K02793:K02794; Psort location: Cytoplasmic, score: 9.98.
  
 0.950
EEC91016.1
PTS system, mannose/fructose/sorbose family, IID component; KEGG: hso:HS_0607 5.4e-53 manZ; protein-N(pi)-phosphohistidine-sugar phosphotransferase (mannose-specific phosphotransferase system IID component) K02796; Psort location: CytoplasmicMembrane, score: 10.00.
 0.945
EEC89735.1
PTS system fructose IIA component; KEGG: tte:TTE0192 5.8e-17 manX; Phosphotransferase system, mannose/fructose-specific component IIA K02793; Psort location: Cytoplasmic, score: 8.87.
 
 0.945
EEC89283.1
PTS system mannose/fructose/sorbose family IID component; KEGG: hso:HS_0607 6.8e-46 manZ; protein-N(pi)-phosphohistidine-sugar phosphotransferase (mannose-specific phosphotransferase system IID component) K02796; Psort location: CytoplasmicMembrane, score: 10.00.
 0.945
EEC89750.1
KEGG: lsl:LSL_1949 2.5e-32 PTS system, mannose-specific IID component K00890; Psort location: CytoplasmicMembrane, score: 10.00.
 0.942
EEC89077.1
KEGG: ecp:ECP_1762 2.1e-42 PTS system, mannose-specific IID component K02796; Psort location: CytoplasmicMembrane, score: 10.00.
 0.941
EEC91009.1
PTS system mannose/fructose/sorbose family IID component; KEGG: eci:UTI89_C2017 5.3e-39 manZ; PTS enzyme IID, mannose-specific K02796; Psort location: CytoplasmicMembrane, score: 10.00.
 0.929
EEC89776.1
PTS system sorbose subfamily IIB component; KEGG: eci:UTI89_C3971 2.5e-32 putative phosphotransferase system protein K02794; Psort location: Cytoplasmic, score: 9.98.
 
 0.889
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.