STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89753.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (80 aa)    
Predicted Functional Partners:
EEC89754.1
Sigma-70, region 4; Psort location: Cytoplasmic, score: 8.87.
 
     0.951
EEC89757.1
Hypothetical protein.
 
    0.815
EEC89759.1
Hypothetical protein; KEGG: rno:291078 5.5e-05 Prpf4b; PRP4 pre-mRNA processing factor 4 homolog B (yeast) K08827; Psort location: CytoplasmicMembrane, score: 9.99.
 
     0.810
EEC89774.1
LPXTG-motif cell wall anchor domain protein; Psort location: Cellwall, score: 10.00.
 
     0.755
EEC89761.1
Hypothetical protein.
 
     0.748
EEC89763.1
Antirestriction protein ArdA; Psort location: Cytoplasmic, score: 8.87.
 
     0.748
EEC89772.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.747
EEC89758.1
NlpC/P60 family protein; KEGG: ssn:SSO_1501 1.3e-19 ydhO; putative lipoprotein K01183; Psort location: Extracellular, score: 9.55.
 
     0.725
EEC89762.1
Antirestriction protein ArdA; Psort location: Cytoplasmic, score: 8.87.
 
     0.725
EEC89769.1
FtsK/SpoIIIE family protein; Psort location: CytoplasmicMembrane, score: 7.80.
 
     0.723
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.