STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ncs1NCS1 nucleoside transporter family protein; KEGG: reh:H16_B0078 0.0081 signal transduction histidine kinase containing a receiver domain (hybrid) and a purine-cytosine permease domain; Psort location: CytoplasmicMembrane, score: 10.00. (405 aa)    
Predicted Functional Partners:
EEC89655.1
Amidohydrolase family protein; KEGG: bcl:ABC4032 5.1e-121 cytosine deaminase K01485; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.959
EEC89697.1
Hypothetical protein; KEGG: bcl:ABC4032 0.0021 cytosine deaminase K01485.
       0.718
EEC89657.1
Putative rRNA methylase; KEGG: spb:M28_Spy0305 9.3e-26 SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 8.87.
       0.574
EEC89658.1
Macro domain protein; KEGG: bur:Bcep18194_A6181 7.0e-21 Appr-1-p processing enzyme family K00985; Psort location: Cytoplasmic, score: 8.87.
       0.574
EEC89659.1
RmuC domain protein; Psort location: Cytoplasmic, score: 8.87.
       0.574
pyrB
KEGG: gka:GK1149 5.5e-76 pyrB; aspartate carbamoyltransferase K00609; Psort location: Cytoplasmic, score: 9.98; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.529
carB
KEGG: bce:BC3886 0. carbamoyl-phosphate synthase large chain K01955; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarB family.
   
    0.418
carB-2
KEGG: bce:BC3886 0. carbamoyl-phosphate synthase large chain K01955; Psort location: Cytoplasmic, score: 8.87; Belongs to the CarB family.
   
    0.418
EEC88922.1
Hpt domain protein; KEGG: syn:slr2098 0.00055 hik21; two-component hybrid histidine kinase K07678; Psort location: Cytoplasmic, score: 8.87.
    
  0.407
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.