Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEC89657.1Putative rRNA methylase; KEGG: spb:M28_Spy0305 9.3e-26 SAM-dependent methyltransferase; Psort location: Cytoplasmic, score: 8.87. (175 aa)    
Predicted Functional Partners:
EEC90203.1
Polyprenyl synthetase; KEGG: bld:BLi02599 2.3e-54 yqiD; similar to geranyltranstransferase; RBL02816 K00795; Psort location: Cytoplasmic, score: 9.98; Belongs to the FPP/GGPP synthase family.
 
 0.795
EEC90225.1
Radical SAM protein, TIGR01212 family; KEGG: btk:BT9727_4481 3.5e-81 conserved hypothetical protein, possible Fe-S oxidoreductase; Psort location: Cytoplasmic, score: 8.87.
     0.777
EEC89659.1
RmuC domain protein; Psort location: Cytoplasmic, score: 8.87.
       0.775
EEC89658.1
Macro domain protein; KEGG: bur:Bcep18194_A6181 7.0e-21 Appr-1-p processing enzyme family K00985; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEC89655.1
Amidohydrolase family protein; KEGG: bcl:ABC4032 5.1e-121 cytosine deaminase K01485; Psort location: Cytoplasmic, score: 8.87.
    
 0.737
EEC91279.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 4.6e-88 glycosyltransferase K00754.
  
 0.623
ncs1
NCS1 nucleoside transporter family protein; KEGG: reh:H16_B0078 0.0081 signal transduction histidine kinase containing a receiver domain (hybrid) and a purine-cytosine permease domain; Psort location: CytoplasmicMembrane, score: 10.00.
       0.574
hydE
Iron-only hydrogenase maturation rSAM protein HydE; KEGG: bth:BT1835 7.4e-104 biotin synthetase K01012; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.557
EEC89697.1
Hypothetical protein; KEGG: bcl:ABC4032 0.0021 cytosine deaminase K01485.
       0.536
nrdD
KEGG: tde:TDE1331 9.4e-136 nrdD; anaerobic ribonucleoside triphosphate reductase K00527.
    
 0.522
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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