STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89606.1MATE efflux family protein; KEGG: vch:VC0207 0.0025 PTS system, sucrose-specific II component K02809:K02810; Psort location: CytoplasmicMembrane, score: 9.99. (448 aa)    
Predicted Functional Partners:
EEC89605.1
Nitrogen regulatory protein P-II; KEGG: ter:Tery_3993 2.0e-68 adenylate/guanylate cyclase K01769; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the P(II) protein family.
  
    0.610
nrdI
nrdI protein; KEGG: ayw:AYWB_025 9.5e-10 nrdA; ribonucleoside-diphosphate reductase alpha chain K00525; Belongs to the NrdI family.
       0.531
EEC89608.1
Hypothetical protein.
       0.531
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.