STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89570.1KEGG: fal:FRAAL1681 8.1e-43 putative ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49. (234 aa)    
Predicted Functional Partners:
EEC90612.1
Efflux ABC transporter, permease protein; KEGG: cch:Cag_0337 5.6e-51 ATPase K06020; Psort location: CytoplasmicMembrane, score: 9.99.
 0.988
EEC89569.1
KEGG: pen:PSEEN3042 0.0011 macB; macrolide ABC efflux protein MacB; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.983
ecfA-2
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.939
EEC90365.1
Efflux ABC transporter, permease protein; KEGG: fnu:FN0522 2.7e-07 exonuclease SBCC K03546; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.937
EEC89473.1
KEGG: hpa:HPAG1_1109 0.0024 glutamine ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
  
 0.869
EEC90813.1
Efflux ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 9.97.
  
 0.829
EEC89385.1
ABC transporter, permease protein; KEGG: bja:blr4464 1.9e-25 probable ABC transporter ATP-binding/permease protein K02028:K02029; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 0.800
EEC89302.1
KEGG: hpa:HPAG1_0922 3.5e-42 amino acid ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 
 0.784
EEC88924.1
KEGG: sma:SAV6546 1.6e-30 putative ABC transporter permease K02028; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.778
EEC89798.1
KEGG: fal:FRAAL3905 1.5e-59 putative ABC-transport protein, ATP-binding component; Psort location: CytoplasmicMembrane, score: 9.49.
  
0.746
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.