STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89482.1Hypothetical protein; KEGG: cal:orf19.2410 2.2e-13 IMH1; involved in vesicular transport K01553; Psort location: Cellwall, score: 9.93. (443 aa)    
Predicted Functional Partners:
EEC89619.1
LytTr DNA-binding domain protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.753
EEC90915.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.746
EEC91377.1
Hypothetical protein.
  
     0.744
EEC89188.1
Repeat protein; Psort location: Extracellular, score: 7.62.
  
     0.721
EEC91336.1
Hypothetical protein; KEGG: pca:Pcar_2039 2.0e-12 ribonuclease, Rne/Rng family protein; Psort location: Extracellular, score: 8.10.
  
     0.719
dut-2
dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
  
     0.719
EEC90896.1
Cell wall-binding repeat protein; KEGG: ava:Ava_3135 3.9e-16 hypothetical protein; Psort location: Cellwall, score: 9.17.
  
     0.706
EEC90880.1
NlpC/P60 family protein; KEGG: smu:SMU.910 7.2e-17 gtfD; glucosyltransferase-S K00689; Psort location: Extracellular, score: 9.55.
  
     0.705
EEC90797.1
Hypothetical protein; KEGG: btk:BT9727_2092 0.0097 pgpB; phosphatidylglycerophosphatase B K01094; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.692
EEC89480.1
Helicase C-terminal domain protein; KEGG: pub:SAR11_0993 5.7e-14 recG; ATP-dependent DNA helicase RecG K03655; Psort location: Cytoplasmic, score: 8.87.
       0.682
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.