STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89414.1Transcriptional regulator, DeoR family; Psort location: Cytoplasmic, score: 8.87. (262 aa)    
Predicted Functional Partners:
EEC89412.1
KEGG: smu:SMU.1491 4.4e-161 lacE; PTS system, lactose-specific enzyme IIBC EIIBC-LAC) K02787:K02788; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.742
EEC89410.1
Haloacid dehalogenase-like hydrolase; KEGG: cch:Cag_0071 1.4e-15 beta-phosphoglucomutase hydrolase K01838; Psort location: Cytoplasmic, score: 8.87.
 
    0.591
lacF
KEGG: sep:SE1783 1.6e-23 PTS system lactose-specific IIA component K02786; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.588
lacG
6-phospho-beta-galactosidase; KEGG: spg:SpyM3_1653 7.7e-157 lacG; putative 6-phospho-beta-galactosidase K01220; Psort location: Cytoplasmic, score: 9.98.
 
   
 0.586
pfkB
1-phosphofructokinase; KEGG: cno:NT01CX_1725 7.5e-95 1-phosphofructokinase K00882; Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
  
  
 0.547
rpiB
KEGG: cpe:CPE2198 1.1e-36 ribose 5-phosphate isomerase K01808; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.522
gap
KEGG: fth:FTH_1121 1.6e-126 gapA; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) K00134; Psort location: Cytoplasmic, score: 9.98.
    
 0.439
rpiA
KEGG: cac:CAC1431 3.2e-48 rpiA; ribose 5-phosphate isomerase K01807; Psort location: Cytoplasmic, score: 8.87.
   
 
  0.437
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
    
 0.428
deoC-2
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
    
 0.428
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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