Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEC89430.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (217 aa)    
Predicted Functional Partners:
EEC89428.1
Hypothetical protein; KEGG: vvu:VV2_1180 2.8e-14 GTP cyclohydrolase II K01497; Psort location: Cytoplasmic, score: 8.87.
       0.788
EEC89429.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.788
EEC89431.1
Type I restriction modification DNA specificity domain protein; KEGG: xcv:XCV0510 1.5e-17 hsdS1; type I site-specific deoxyribonuclease (specificity subunit) K01154.
       0.752
EEC89432.1
DNA-binding helix-turn-helix protein; KEGG: bce:BC3704 0.00025 LexA repressor K01356; Psort location: Cytoplasmic, score: 8.87.
       0.746
EEC89426.1
Hypothetical protein; KEGG: hpa:HPAG1_1462 7.4e-06 type I R-M system specificity subunit K01152.
       0.689
EEC89427.1
Hypothetical protein; KEGG: hpa:HPAG1_1462 3.9e-08 type I R-M system specificity subunit K01152.
       0.689
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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