Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEC89316.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (488 aa)    
Predicted Functional Partners:
EEC89451.1
Response regulator receiver domain protein; KEGG: vfi:VF1296 2.3e-54 luxQ; sensor protein LuxQ; Psort location: CytoplasmicMembrane, score: 9.49.
    
  0.571
EEC89265.1
PAS domain S-box protein; KEGG: chu:CHU_2895 2.1e-57 sensory box histidine kinase/response regulator; Psort location: CytoplasmicMembrane, score: 9.49.
    
  0.571
EEC90597.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
   
 0.543
EEC89315.1
HD domain protein; KEGG: ava:Ava_1777 1.4e-22 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; Psort location: Cytoplasmic, score: 8.87.
       0.437
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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