STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89189.1MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00. (458 aa)    
Predicted Functional Partners:
EEC89712.1
Hypothetical protein; KEGG: sat:SYN_01231 6.3e-27 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
      0.901
EEC89188.1
Repeat protein; Psort location: Extracellular, score: 7.62.
       0.773
EEC89187.1
DNA primase small subunit; KEGG: cal:orf19.2798 1.7e-13 putative helicase K01152.
       0.602
EEC89190.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.507
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.507
EEC89065.1
Hypothetical protein; KEGG: sat:SYN_01231 1.2e-23 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
      0.476
ysxC
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
       0.403
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.