STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89200.1Haloacid dehalogenase-like hydrolase; KEGG: cvi:CV1402 7.4e-33 probable phosphoglycolate phosphatase K01091; Psort location: Cytoplasmic, score: 8.87. (213 aa)    
Predicted Functional Partners:
EEC90065.1
Phosphotransferase system, EIIB; KEGG: lpl:lp_3513 3.7e-77 pts30BCA; beta-glucosides PTS, EIIBCA K02755:K02756:K02757; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.873
EEC89042.1
Phosphotransferase system, EIIC; KEGG: bbu:BBB29 1.2e-135 malX; PTS system, maltose and glucose-specific IIBC component K02790:K02791; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.873
EEC90913.1
Competence/damage-inducible domain protein CinA; Belongs to the CinA family.
    
 0.857
EEC91230.1
KEGG: lwe:lwe0114 3.8e-203 inosine-5-monophosphate dehydrogenase, putative K00088; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.856
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
  
 
  0.849
atpA-2
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
 
  0.846
EEC89902.1
Chorismate mutase; KEGG: vfi:VF0561 3.4e-44 chorismate mutase K04093:K04518; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.831
EEC89086.1
HAD hydrolase, family IIB; KEGG: pfa:PF10_0169 0.00031 phosphomannomutase, putative K01840; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.798
EEC89201.1
Pseudouridine synthase, RluA family; KEGG: uur:UU113 3.5e-49 sfhB; pseudouridine synthase (uracil hydrolase) K01718; Psort location: Cytoplasmic, score: 8.87; Belongs to the pseudouridine synthase RluA family.
  
  
 0.797
EEC89202.1
Transporter, CPA2 family; Psort location: CytoplasmicMembrane, score: 10.00.
       0.747
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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