STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89118.1KEGG: pha:PSHAa2410 2.7e-19 endoribonuclease with L-PSP domain; Psort location: Cytoplasmic, score: 8.87. (125 aa)    
Predicted Functional Partners:
EEC89915.1
KEGG: mpe:MYPE310 4.3e-60 fusA; elongation factor G K02355; Psort location: Cytoplasmic, score: 9.98.
   
 0.945
EEC89231.1
KEGG: tte:TTE2333 2.0e-172 fusA2; translation elongation and release factors (GTPases) K02355; Psort location: Cytoplasmic, score: 9.65.
   
 0.945
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 0.945
EEC89902.1
Chorismate mutase; KEGG: vfi:VF0561 3.4e-44 chorismate mutase K04093:K04518; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.869
EEC89119.1
Hypothetical protein.
       0.768
pyrB
KEGG: gka:GK1149 5.5e-76 pyrB; aspartate carbamoyltransferase K00609; Psort location: Cytoplasmic, score: 9.98; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
    0.706
EEC89645.1
Glycerate kinase; KEGG: chy:CHY_1268 1.1e-72 garK; glycerate kinase 2 K00865; Belongs to the glycerate kinase type-1 family.
 
    0.650
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 
 0.645
EEC91033.1
Endoribonuclease L-PSP; KEGG: ape:APE_1501.1 1.8e-06 ribonuclease UK114.
  
     0.614
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
   0.592
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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