STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC89109.1Divergent AAA domain protein; KEGG: mma:MM0198 3.1e-41 ATP-dependent DNA helicase K01529. (482 aa)    
Predicted Functional Partners:
EEC89792.1
Hypothetical protein; KEGG: tth:TTC1951 4.9e-29 recG; ATP-dependent DNA helicase RecG-related protein K01529; Psort location: Cytoplasmic, score: 8.87.
 
  
  0.869
EEC89928.1
Divergent AAA domain protein; KEGG: mma:MM0198 1.5e-20 ATP-dependent DNA helicase K01529; Psort location: Cytoplasmic, score: 8.87.
 
 
 
0.855
EEC90803.1
KEGG: sau:SA1070 4.0e-121 recG; ATP-dependent DNA helicase K03655; Psort location: Cytoplasmic, score: 8.87.
    
  0.845
EEC88976.1
Divergent AAA domain protein.
  
     0.739
EEC89108.1
Amidohydrolase; KEGG: fnu:FN1063 1.5e-48 N-acyl-L-amino acid amidohydrolase K01436; Psort location: Cytoplasmic, score: 8.87.
       0.678
EEC89709.1
Divergent AAA domain protein; KEGG: fnu:FN0191 3.2e-32 ATP-dependent DNA helicase RecG K01529; Psort location: Cytoplasmic, score: 8.87.
 
  
 
0.598
EEC89107.1
Na/Pi-cotransporter II-like protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.480
EEC89791.1
Hypothetical protein; KEGG: tth:TTC1951 0.0058 recG; ATP-dependent DNA helicase RecG-related protein K01529.
    
  0.442
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.430
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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