STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC88981.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26. (360 aa)    
Predicted Functional Partners:
EEC88980.1
ABC transporter, ATP-binding protein; KEGG: fnu:FN1797 3.9e-27 potA; spermidine/putrescine transport ATP-binding protein potA K02052; Psort location: CytoplasmicMembrane, score: 9.82.
  
 0.925
EEC88982.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.757
EEC91099.1
KEGG: hpa:HPAG1_1162 1.4e-20 ABC transporter, ATP-binding protein K06022; Psort location: CytoplasmicMembrane, score: 9.49.
  
 0.684
EEC90602.1
KEGG: fal:FRAAL1877 1.8e-31 putative ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
  
 0.684
EEC90497.1
KEGG: lwe:lwe1990 4.1e-32 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49.
  
 0.684
EEC89795.1
KEGG: lwe:lwe1990 1.5e-32 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49.
  
 0.684
EEC89181.1
Hypothetical protein; KEGG: rru:Rru_A0069 1.9e-08 ABC transporter component K01990; Psort location: Cytoplasmic, score: 8.87.
  
 0.684
EEC89179.1
Hypothetical protein; KEGG: lwe:lwe2158 8.5e-09 ABC transporter, ATP-binding protein K06020.
  
 0.684
EEC89156.1
Hypothetical protein; KEGG: lwe:lwe2158 2.4e-08 ABC transporter, ATP-binding protein K06020.
  
 0.684
EEC88971.1
KEGG: fal:FRAAL3681 2.3e-29 putative ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
  
 0.684
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.