STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC88983.1Peptidase, M56 family; Psort location: CytoplasmicMembrane, score: 9.99. (366 aa)    
Predicted Functional Partners:
EEC88984.1
Transcriptional regulator, BlaI/MecI/CopY family; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.890
EEC90686.1
NlpC/P60 family protein; KEGG: bat:BAS5084 2.2e-18 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; Psort location: Extracellular, score: 9.55.
  
 
  0.800
EEC89756.1
Transcriptional regulator, BlaI/MecI/CopY family; KEGG: bcz:BCZK0993 1.2e-07 blaI; beta-lactamase (penicillinase) repressor K01467.
 
 
 0.678
EEC91336.1
Hypothetical protein; KEGG: pca:Pcar_2039 2.0e-12 ribonuclease, Rne/Rng family protein; Psort location: Extracellular, score: 8.10.
  
     0.620
EEC89482.1
Hypothetical protein; KEGG: cal:orf19.2410 2.2e-13 IMH1; involved in vesicular transport K01553; Psort location: Cellwall, score: 9.93.
  
     0.571
EEC90600.1
Hypothetical protein; KEGG: bcl:ABC3481 2.7e-12 beta-lactamase K01467.
 
  
  0.565
EEC90915.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.542
EEC89619.1
LytTr DNA-binding domain protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.535
EEC89334.1
Transcriptional regulator, BlaI/MecI/CopY family; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.533
EEC91137.1
Leucine Rich Repeat protein; KEGG: ctc:CTC00520 3.6e-24 cwp66 homolog/N-acetylmuramoyl-L-alanine amidase K01446; Psort location: Extracellular, score: 7.62.
  
     0.519
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.