STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC88920.1ACT domain protein; KEGG: hwa:HQ3129A 5.8e-06 purU; formyltetrahydrofolate deformylase K01433; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0237 family. (99 aa)    
Predicted Functional Partners:
EEC88921.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.949
EEC88919.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.786
EEC88917.1
KEGG: lma:LmjF30.2090 6.2e-68 alcohol dehydrogenase, putative K00001; Psort location: Cytoplasmic, score: 9.98.
       0.729
EEC88918.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2296 2.0e-119 aldehyde dehydrogenase K00129; Psort location: Cytoplasmic, score: 9.98.
       0.727
EEC89187.1
DNA primase small subunit; KEGG: cal:orf19.2798 1.7e-13 putative helicase K01152.
    
 0.626
serC
Phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
     
 0.572
EEC90417.1
Putative L-serine ammonia-lyase; KEGG: pgi:PG0084 6.2e-84 sda; L-serine dehydratase, iron-sulfur-dependent, single chain form K01752; Psort location: Cytoplasmic, score: 8.87.
     
 0.567
cysE
KEGG: dar:Daro_1947 2.4e-50 serine O-acetyltransferase K00640; Psort location: Cytoplasmic, score: 9.98.
     
 0.532
pgsA
KEGG: lwe:lwe1412 2.9e-38 pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase K00995; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
  0.510
cysK
Cysteine synthase A; KEGG: bth:BT3080 4.8e-109 cysteine synthase A K01738; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
 0.496
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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