STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC88921.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (451 aa)    
Predicted Functional Partners:
EEC88920.1
ACT domain protein; KEGG: hwa:HQ3129A 5.8e-06 purU; formyltetrahydrofolate deformylase K01433; Psort location: Cytoplasmic, score: 8.87; Belongs to the UPF0237 family.
 
     0.949
EEC88919.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.760
EEC88918.1
Aldehyde dehydrogenase (NAD) family protein; KEGG: cpr:CPR_2296 2.0e-119 aldehyde dehydrogenase K00129; Psort location: Cytoplasmic, score: 9.98.
       0.709
EEC88917.1
KEGG: lma:LmjF30.2090 6.2e-68 alcohol dehydrogenase, putative K00001; Psort location: Cytoplasmic, score: 9.98.
       0.703
EEC88922.1
Hpt domain protein; KEGG: syn:slr2098 0.00055 hik21; two-component hybrid histidine kinase K07678; Psort location: Cytoplasmic, score: 8.87.
       0.488
EEC88916.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.417
EEC88915.1
Hypothetical protein.
       0.410
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.