STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC88928.1Ser/Thr phosphatase family protein; Psort location: Cytoplasmic, score: 8.87. (210 aa)    
Predicted Functional Partners:
EEC88927.1
Hypothetical protein.
       0.677
EEC88929.1
UbiC transcription regulator-associated domain protein; KEGG: mtc:MT0817 1.5e-13 dihydrolipoamide dehydrogenase K00382; Psort location: Cytoplasmic, score: 8.87.
       0.664
EEC88930.1
ROK family protein; KEGG: spb:M28_Spy1352 3.7e-31 glucokinase K00845; Psort location: Cytoplasmic, score: 9.98.
       0.664
EEC88931.1
MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.664
EEC89482.1
Hypothetical protein; KEGG: cal:orf19.2410 2.2e-13 IMH1; involved in vesicular transport K01553; Psort location: Cellwall, score: 9.93.
  
     0.616
EEC88924.1
KEGG: sma:SAV6546 1.6e-30 putative ABC transporter permease K02028; Psort location: CytoplasmicMembrane, score: 10.00.
       0.483
EEC89619.1
LytTr DNA-binding domain protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.482
EEC91289.1
Hypothetical protein; KEGG: bcz:BCZK4973 1.8e-07 wciJ; glycosyl transferase, group 1; possible capsular polysaccharide biosynthesis protein K00754; Psort location: Cytoplasmic, score: 8.87.
  
     0.480
EEC88925.1
KEGG: fnu:FN0801 2.7e-74 amino acid transport ATP-binding protein K02028; Psort location: CytoplasmicMembrane, score: 9.49.
       0.480
EEC88926.1
Putative transaminase; KEGG: sai:Saci_1837 1.9e-43 aspartate aminotransferase K00812; Psort location: Cytoplasmic, score: 8.87.
       0.480
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.