STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_1068PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: scl:sce3304 putative xylosidase/arabinosidase. (797 aa)    
Predicted Functional Partners:
Rmar_1185
Beta-glucuronidase; PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: aba:Acid345_0579 beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
  
  0.872
Rmar_2303
PFAM: Glucuronate isomerase; KEGG: sde:Sde_1272 glucuronate isomerase.
    
 0.832
Rmar_2390
KEGG: sde:Sde_2946 hypothetical protein.
 
  
 0.771
Rmar_0475
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: bha:BH1874 alpha-L-arabinosidase.
 
  
 0.754
Rmar_1480
PFAM: glycosyl hydrolase 53 domain protein; KEGG: sde:Sde_2827 arabinogalactan endo-1,4-beta- galactosidase.
  
  
 0.685
Rmar_1069
PFAM: glycoside hydrolase family 10; Carbohydrate- binding CenC domain protein; SMART: glycoside hydrolase family 10; KEGG: xca:xccb100_4330 exported endo-1,4-beta- xylanase.
 
   
0.673
Rmar_1079
Alpha-glucuronidase; PFAM: Glycosyl hydrolase 67 middle domain protein; glycosyl hydrolase 67 C-teriminal domain protein; glycoside hydrolase family 67; KEGG: xca:xccb100_4307 exported alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.660
manA
Mannan endo-1,4-beta-mannosidase; Acts as endo-acting enzyme with a requirement for at least five sugar moieties for effective catalytic activity. Hydrolyzes carob- galactomannan (locust bean gum) effectively and to a smaller extent guar gum, but not yeast mannan.
  
   
 0.623
Rmar_1074
PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: sus:Acid_2816 glycoside hydrolase family protein.
 
   
 0.610
Rmar_0478
PFAM: protein of unknown function DUF1680; KEGG: bha:BH1877 hypothetical protein.
 
   
 0.596
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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