STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_1738PFAM: glucose-methanol-choline oxidoreductase; KEGG: pzu:PHZ_c2153 choline dehydrogenase. (572 aa)    
Predicted Functional Partners:
Rmar_1736
KEGG: pzu:PHZ_c2152 hypothetical protein.
 
 
 0.945
Rmar_1735
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: amc:MADE_00428 twin-arginine translocation pathway signal.
 
     0.818
Rmar_1734
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: NAD binding oxidoreductase.
 
    0.776
Rmar_1737
PFAM: glucose-methanol-choline oxidoreductase; KEGG: pzu:PHZ_c2153 choline dehydrogenase.
 
    
0.759
Rmar_1623
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7226 hypothetical protein.
 
     0.743
Rmar_1742
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
 
     0.728
Rmar_2789
KEGG: sus:Acid_7383 Tat pathway signal sequence domain-containing protein.
 
     0.728
Rmar_0423
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_7533 xylose isomerase domain- containing protein.
 
     0.704
Rmar_1744
PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: msu:MS1530 ProP protein.
 
     0.667
Rmar_0232
TIGRFAM: caa(3)-type oxidase, subunit IV; KEGG: sus:Acid_0500 caa(3)-type oxidase, subunit IV.
   
 
 0.604
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.