STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_1934PFAM: protein of unknown function DUF72; KEGG: sfu:Sfum_3869 protein of unknown function DUF72. (354 aa)    
Predicted Functional Partners:
Rmar_1933
PFAM: conserved hypothetical protein; KEGG: noc:Noc_1651 hypothetical protein.
 
    0.842
Rmar_1932
PFAM: histidine triad (HIT) protein; KEGG: pca:Pcar_1504 HIT (HINT, histidine triad) family protein.
       0.778
Rmar_1864
Hypothetical protein.
  
     0.708
Rmar_0704
PFAM: protein of unknown function DUF490; KEGG: pla:Plav_0383 hypothetical protein.
  
     0.688
Rmar_2361
PFAM: PBS lyase HEAT domain protein repeat- containing protein; SMART: PBS lyase HEAT domain protein repeat- containing protein; KEGG: ade:Adeh_3520 heat repeat-containing protein.
  
     0.685
Rmar_1201
PFAM: protein of unknown function DUF490; KEGG: mrd:Mrad2831_2388 hypothetical protein.
  
     0.684
Rmar_2692
PFAM: outer membrane efflux protein; KEGG: gsu:GSU0814 outer membrane efflux protein, putative.
  
     0.668
Rmar_1878
PFAM: protein of unknown function DUF88; KEGG: ade:Adeh_2817 hypothetical protein.
 
     0.652
Rmar_2029
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bpy:Bphyt_3327 hypothetical protein.
  
     0.651
Rmar_2569
PFAM: Abortive infection protein; KEGG: cvi:CV_3749 hypothetical protein.
  
     0.651
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.