Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rmar_2000PFAM: nitroreductase; KEGG: mca:MCA2267 nitroreductase family protein, putative. (213 aa)    
Predicted Functional Partners:
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.641
Rmar_1781
PFAM: ABC-2 type transporter; KEGG: gme:Gmet_0656 hypothetical protein.
  
    0.607
Rmar_1782
PFAM: ABC-2 type transporter; KEGG: gur:Gura_1151 ABC-2 type transporter.
  
    0.607
Rmar_1789
PFAM: ABC-2 type transporter; KEGG: mxa:MXAN_5316 putative daunorubicin resistance ABC transporter, permease protein.
  
    0.607
Rmar_1999
PFAM: DNA polymerase beta domain protein region; KEGG: nis:NIS_1576 nucleotidyltransferase.
       0.574
Rmar_2433
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.479
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.451
Rmar_2001
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; protein of unknown function DUF201; phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: gur:Gura_1864 carbamoyl-phosphate synthase, large subunit.
  
  
 0.430
Rmar_1384
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: met:M446_3093 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.407
Rmar_0959
PFAM: Abortive infection protein; KEGG: scl:sce0660 putative ABC transporter sodium permease.
  
  
 0.402
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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