STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_2012Nitrous-oxide reductase; PFAM: cytochrome c oxidase subunit II; KEGG: dar:Daro_1575 cytochrome c oxidase, subunit II. (663 aa)    
Predicted Functional Partners:
Rmar_2016
KEGG: bpd:BURPS668_2063 copper ABC transporter, permease protein.
 
 
 0.954
Rmar_2014
PFAM: periplasmic copper-binding; SMART: Carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; KEGG: wsu:WS0919 nitrous oxidase accessory protein.
 
  
 0.953
Rmar_2013
KEGG: ccv:CCV52592_0008 hypothetical protein.
 
  
 0.931
Rmar_2011
Hypothetical protein; KEGG: gme:Gmet_0328 cytochrome c, class I.
 
  
 0.922
Rmar_2018
KEGG: afw:Anae109_0248 hypothetical protein.
 
  
 0.871
Rmar_2010
TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gur:Gura_2164 BadM/Rrf2 family transcriptional regulator.
 
   
 0.723
Rmar_2015
Heme exporter protein CcmA; KEGG: gbe:GbCGDNIH1_1201 ABC transporter ATP- binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.723
Rmar_2293
Protein of unknown function DUF542 ScdA domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
    0.708
Rmar_0162
PFAM: cytochrome c oxidase subunit II; KEGG: mag:amb2221 heme/copper-type cytochrome/quinol oxidase, subunit 2.
 
  
 0.603
Rmar_1769
PFAM: ABC-2 type transporter; KEGG: dol:Dole_2069 ABC-2 type transporter.
  
 
 0.592
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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