STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmar_2039PFAM: TrkA-N domain protein; Ion transport 2 domain protein; TrkA-C domain protein; KEGG: pca:Pcar_3127 K+ transport systems, NAD- binding component. (350 aa)    
Predicted Functional Partners:
Rmar_2038
Hypothetical protein.
 
     0.799
Rmar_0424
PFAM: sodium/hydrogen exchanger; TrkA-C domain protein; TrkA-N domain protein; KEGG: hch:HCH_05288 NhaP-type Na+/H+ and K+/H+ antiporters; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
 
 0.613
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.601
Rmar_0138
KEGG: pca:Pcar_0086 TrkH family potassium uptake protein; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter.
 
 
 0.573
Rmar_2040
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sus:Acid_4899 hypothetical protein.
       0.573
Rmar_1336
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: predicted protein.
   
    0.504
Rmar_0918
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.461
Rmar_0735
TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: dde:Dde_2029 K+ transporter trk.
  
 
 0.449
Rmar_2036
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_6909 putative 3-oxoacyl-(acyl- carrier-protein) reductase.
       0.439
Your Current Organism:
Rhodothermus marinus
NCBI taxonomy Id: 518766
Other names: R. marinus DSM 4252, Rhodothermus marinus DSM 4252, Rhodothermus marinus str. DSM 4252, Rhodothermus marinus strain DSM 4252
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.