STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG34808.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (379 aa)    
Predicted Functional Partners:
KYG34810.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.933
KYG34809.1
Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.880
KYG34807.1
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.641
KYG33164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.513
KYG29512.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.508
KYG34805.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.489
KYG34806.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.489
KYG33165.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
KYG34804.1
Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
KYG33170.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
Your Current Organism:
Bacillus trypoxylicola
NCBI taxonomy Id: 519424
Other names: B. trypoxylicola, Bacillus trypoxylicola Aizawa et al. 2010, KCTC 13244, NBRC 102646, strain SU1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.