STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KYG26000.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)    
Predicted Functional Partners:
KYG26109.1
ATP synthase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.900
KYG34760.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.688
KYG32284.1
Delta-aminolevulinic acid dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ALAD family.
    
 0.675
KYG33708.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 
 0.671
KYG30873.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
 0.640
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
     
 0.638
KYG29546.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.590
KYG31873.1
single-stranded-DNA-specific exonuclease RecJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.413
Your Current Organism:
Bacillus trypoxylicola
NCBI taxonomy Id: 519424
Other names: B. trypoxylicola, Bacillus trypoxylicola Aizawa et al. 2010, KCTC 13244, NBRC 102646, strain SU1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.