Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_0034Hypothetical protein; KEGG: bca:BCE_3246 permease, putative. (206 aa)    
Predicted Functional Partners:
Smon_0033
Hypothetical protein; KEGG: sus:Acid_2815 major facilitator transporter.
 
     0.941
Smon_0032
Hypothetical protein; KEGG: GH20737 gene product from transcript GH20737- RA.
       0.773
Smon_0035
Fructose-1,6-bisphosphate aldolase, class II; KEGG: pca:Pcar_2253 fructose-bisphosphate aldolase; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II.
  
  
 0.551
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.459
Smon_0136
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ret:RHE_CH01150 putative ABC transporter, ATP- binding protein.
  
     0.451
Smon_0425
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bar:GBAA0532 ABC transporter ATP-binding protein.
  
     0.445
Smon_0459
Multidrug resistance efflux pump-like protein; KEGG: bca:BCE_0168 hypothetical protein.
  
 
 0.442
Smon_0300
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cco:CCC13826_1933 pyruvate:ferredoxin (flavodoxin) oxidoreductase.
     
 0.441
Smon_0110
TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphotransferase system EIIC; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: bcy:Bcer98_2394 PTS system, fructose subfamily, IIC subunit.
    
 
 0.432
msrA
methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.418
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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