Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rpmHTIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: lpc:LPC_3320 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)    
Predicted Functional Partners:
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: csa:Csal_2971 LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.973
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.972
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.970
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.968
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: aba:Acid345_1250 LSU ribosomal protein L36P; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.962
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: mno:Mnod_5920 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.961
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: gsu:GSU0643 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.961
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.959
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.958
rpmI
TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: sat:SYN_01719 50S ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.958
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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