STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smon_0131PFAM: B3/4 domain protein; KEGG: mlo:mll6378 hypothetical protein. (231 aa)    
Predicted Functional Partners:
argS
KEGG: apa:APP7_0039 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
    
 0.849
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gsu:GSU2271 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
      0.844
Smon_0130
PFAM: OsmC family protein; KEGG: ccs:CCNA_03093 OsmC-like protein.
       0.787
Smon_0129
Hypothetical protein.
       0.773
Smon_0125
PFAM: polysaccharide lyase 8 alpha-helical; polysaccharide lyase family 8; KEGG: vfm:VFMJ11_A1113 hyaluronate lyase.
 
     0.540
Smon_0132
Hypothetical protein; KEGG: bpy:Bphyt_4291 porin gram-negative type.
       0.518
Smon_0128
Hypothetical protein.
       0.503
Smon_0127
PFAM: glycosyl hydrolase family 88; KEGG: unsaturated glucuronyl hydrolase.
       0.496
Smon_0126
PFAM: sulfatase; type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: pmr:PMI2124 exported sulfatase.
       0.492
Smon_0124
PFAM: Heparinase II/III family protein; KEGG: bat:BAS5121 hypothetical protein.
       0.471
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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