Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_0305KEGG: pen:PSEEN3238 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Smon_0309
Hypothetical protein.
  
    0.901
Smon_0306
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppf:Pput_1967 ABC transporter related.
  
    0.841
Smon_0308
KEGG: vpa:VPA0165 hypothetical protein.
  
    0.830
Smon_0307
PFAM: ABC-3 protein; KEGG: psb:Psyr_1949 hypothetical protein.
  
    0.825
Smon_0303
Hypothetical protein; KEGG: CARD9; caspase recruitment domain family, member 9.
       0.501
Smon_0304
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: bsu:BSU25570 putative integral membrane protein.
       0.501
Smon_0310
KEGG: hypothetical protein.
       0.487
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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