Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Smon_0442PFAM: MscS Mechanosensitive ion channel; KEGG: hdu:HD0647 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Smon_0443
PFAM: beta-lactamase domain protein; KEGG: bha:BH2820 hypothetical protein.
       0.782
Smon_0441
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sew:SeSA_A0730 probable pyridine nucleotide- disulfide oxidoreductase YkgC.
       0.747
Smon_0439
Hypothetical protein; KEGG: cco:CCC13826_1620 uracil-DNA glycosylase superfamily protein.
     
 0.743
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.737
Smon_0438
PFAM: beta-lactamase domain protein; KEGG: bsu:BSU40370 hypothetical protein.
       0.716
Smon_0444
Hypothetical protein.
       0.503
asnS
TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: bba:Bd1054 asparaginyl-tRNA synthetase.
  
    0.487
Smon_0432
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
       0.484
Smon_0436
PFAM: GTP-binding protein HSR1-related; KEGG: ban:BA4562 GTP-binding protein YqeH.
       0.479
Smon_0435
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bcb:BCB4264_A4199 integrase/recombinase XerD; Belongs to the 'phage' integrase family.
       0.476
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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