Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Smon_0468Hypothetical protein. (171 aa)    
Predicted Functional Partners:
Smon_0466
Hypothetical protein.
       0.737
Smon_0467
Hypothetical protein.
      
0.737
Smon_0465
Hypothetical protein.
       0.608
Smon_0461
PFAM: inner-membrane translocator; KEGG: bba:Bd3386 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.409
Smon_0462
PFAM: inner-membrane translocator; KEGG: mxa:MXAN_6663 putative branched chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.409
Smon_0463
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bba:Bd3388 branched-chain amino acid transport system.
       0.409
Smon_0464
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_2185 ABC transporter related protein.
       0.409
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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