Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Smon_0523 | Smon_0524 | Smon_0523 | Smon_0524 | Hypothetical protein; KEGG: vsa:pVSAL840_45 transposase. | Hypothetical protein. | 0.474 |
Smon_0523 | upp | Smon_0523 | Smon_0525 | Hypothetical protein; KEGG: vsa:pVSAL840_45 transposase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.474 |
Smon_0524 | Smon_0523 | Smon_0524 | Smon_0523 | Hypothetical protein. | Hypothetical protein; KEGG: vsa:pVSAL840_45 transposase. | 0.474 |
Smon_0524 | Smon_0526 | Smon_0524 | Smon_0526 | Hypothetical protein. | TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.581 |
Smon_0524 | rpsT | Smon_0524 | Smon_0527 | Hypothetical protein. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.421 |
Smon_0524 | upp | Smon_0524 | Smon_0525 | Hypothetical protein. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.780 |
Smon_0526 | Smon_0524 | Smon_0526 | Smon_0524 | TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Hypothetical protein. | 0.581 |
Smon_0526 | rpsT | Smon_0526 | Smon_0527 | TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.996 |
Smon_0526 | upp | Smon_0526 | Smon_0525 | TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.644 |
rpsT | Smon_0524 | Smon_0527 | Smon_0524 | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | Hypothetical protein. | 0.421 |
rpsT | Smon_0526 | Smon_0527 | Smon_0526 | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.996 |
rpsT | upp | Smon_0527 | Smon_0525 | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.528 |
upp | Smon_0523 | Smon_0525 | Smon_0523 | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | Hypothetical protein; KEGG: vsa:pVSAL840_45 transposase. | 0.474 |
upp | Smon_0524 | Smon_0525 | Smon_0524 | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | Hypothetical protein. | 0.780 |
upp | Smon_0526 | Smon_0525 | Smon_0526 | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: mms:mma_0620 50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. | 0.644 |
upp | rpsT | Smon_0525 | Smon_0527 | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.528 |