Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Smon_0564PFAM: Patatin; KEGG: shn:Shewana3_4351 patatin. (351 aa)    
Predicted Functional Partners:
Smon_0565
PFAM: heat shock protein DnaJ domain protein; KEGG: abu:Abu_1033 DnaJ domain-containing protein.
       0.770
Smon_0563
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lch:Lcho_4268 ABC transporter-related protein.
       0.765
Smon_0846
PFAM: Ankyrin; SMART: Ankyrin; KEGG: wpi:WPa_1379 ankyrin repeat domain protein.
  
     0.561
Smon_0562
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bcr:BCAH187_A2378 putative alcohol dehydrogenase, zinc-containing.
     
 0.558
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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