Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Smon_0661KEGG: sbn:Sbal195_1986 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Smon_0662
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; KEGG: sbn:Sbal195_1987 DEAD/DEAH box helicase domain-containing protein.
       0.806
Smon_0660
KEGG: lch:Lcho_1314 hypothetical protein.
       0.746
Smon_0658
PFAM: restriction modification system DNA specificity domain; KEGG: dde:Dde_1860 type I restriction enzyme, S subunit.
       0.714
Smon_0659
PFAM: protein of unknown function DUF450; type III restriction protein res subunit; SMART: DEAD-like helicase; KEGG: dde:Dde_1859 DEAD/DEAH box helicase-like.
       0.714
Smon_0656
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bca:BCE_0370 hypothetical protein.
       0.711
Smon_0657
PFAM: N-6 DNA methylase; KEGG: dde:Dde_1861 type I restriction-modification system specificity subunit.
       0.711
Smon_0655
KEGG: hsm:HSM_1184 hypothetical protein.
       0.468
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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