Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Smon_0716DNA-(apurinic or apyrimidinic site) lyase; KEGG: rec:RHECIAT_PB0000014 putative N- glycosylase/DNA lyase protein, HhH-GPD family; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein. (217 aa)    
Predicted Functional Partners:
Smon_0550
Pseudouridylate synthase-like protein; KEGG: nis:NIS_1108 tRNA pseudouridine synthase A; Belongs to the tRNA pseudouridine synthase TruA family.
  
     0.703
Smon_0715
TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: rso:RSc2714 preprotein translocase subunit YajC.
 
     0.637
Smon_1129
TIGRFAM: conserved hypothetical protein; KEGG: bcr:BCAH187_A0963 putative ABC transporter, permease protein.
  
     0.602
Smon_0916
KEGG: hypothetical protein.
  
     0.569
Smon_0714
KEGG: gsu:GSU1821 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
       0.564
rnr
VacB and RNase II family 3'-5' exoribonuclease; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.544
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.542
Smon_0712
PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: bha:BH1327 hypothetical protein.
       0.542
Smon_0713
KEGG: wbr:WGLp413 hypothetical protein.
       0.542
Smon_0958
PFAM: GCN5-related N-acetyltransferase; KEGG: wsu:WS0070 hypothetical protein.
  
     0.515
Your Current Organism:
Streptobacillus moniliformis
NCBI taxonomy Id: 519441
Other names: S. moniliformis DSM 12112, Streptobacillus moniliformis ATCC 14647, Streptobacillus moniliformis DSM 12112, Streptobacillus moniliformis str. DSM 12112, Streptobacillus moniliformis strain DSM 12112
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